Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13515 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1187560 bp
Thymine Count
1202732 bp
Guanine Count
1744177 bp
Cytosine Count
1734867 bp
Genome Length
5869336 bp
Protein-coding Genes
5118 genes
Non-Coding Genes
81 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PviCFBP13515_00390 | Not Available | Negative | 75191 - 75628 | 16270.6 |
| hydroxyacid dehydrogenase | PviCFBP13515_00395 | Not Available | Negative | 75674 - 76663 | 35340.6 |
| hybrid sensor histidine kinase/response regulator | PviCFBP13515_00400 | Not Available | Negative | 76843 - 79596 | 100553.0 |
| cysteine synthase b | PviCFBP13515_00405 | Not Available | Positive | 79844 - 80746 | 32538.0 |
| 23s rrna (uracil(1939)-c(5))-methyltransferase rlmd | PviCFBP13515_00410 | Not Available | Positive | 80746 - 82101 | 49343.5 |
| gtp diphosphokinase | PviCFBP13515_00415 | Not Available | Positive | 82259 - 84502 | 83905.0 |
| nucleoside triphosphate pyrophosphohydrolase | PviCFBP13515_00420 | Not Available | Positive | 84578 - 85411 | 31650.5 |
| duf2058 domain-containing protein | PviCFBP13515_00425 | Not Available | Positive | 85438 - 85980 | 20390.4 |
| hypothetical protein | PviCFBP13515_00430 | Not Available | Negative | 86049 - 86228 | 6863.86 |
| duf3108 domain-containing protein | PviCFBP13515_00435 | Not Available | Negative | 87094 - 87807 | 26342.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
