Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Carbamoyl phosphate synthase small subunit | ALP40_03441 | Not Available | Negative | 2159122 - 2159721 | 21750.0 |
| Lysozyme | ALP40_03442 | Not Available | Negative | 2160115 - 2160624 | 18407.9 |
| Glycoside hydrolase family 19 protein | ALP40_03443 | Not Available | Negative | 2160621 - 2161166 | 19955.1 |
| tail fiber assembly domain protein | ALP40_03444 | Not Available | Negative | 2161338 - 2162333 | 36376.0 |
| Putative tail fiber assembly protein | ALP40_03445 | Not Available | Negative | 2162604 - 2163101 | 18363.9 |
| Tail protein | ALP40_03446 | Not Available | Negative | 2163762 - 2165006 | 42563.8 |
| Tail protein | ALP40_100060 | Not Available | Negative | 2165017 - 2165616 | 22344.8 |
| Tail protein | ALP40_03447 | Not Available | Negative | 2165604 - 2166644 | 36900.6 |
| Putative tail protein | ALP40_03448 | Not Available | Negative | 2166634 - 2167032 | 15343.1 |
| Putative base plate assembly protein | ALP40_03449 | Not Available | Negative | 2167032 - 2167541 | 18013.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
