Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome o ubiquinol oxidase subunit ii | ALP40_02600 | Not Available | Negative | 1045231 - 1046139 | 33867.2 |
| hypothetical protein | ALP40_02601 | Not Available | Positive | 1046679 - 1047053 | 13584.7 |
| clp protease | ALP40_02602 | Not Available | Negative | 1047069 - 1047620 | 20279.4 |
| glucose starvation-inducible protein b | ALP40_02603 | Not Available | Negative | 1047769 - 1048116 | 11491.6 |
| hypothetical protein | ALP40_02604 | Not Available | Negative | 1048340 - 1048516 | 5873.56 |
| hypothetical protein | ALP40_05009 | Not Available | Positive | 1049328 - 1051460 | 79695.0 |
| chemotaxis protein chew | ALP40_02605 | Not Available | Positive | 1051457 - 1052935 | 53444.7 |
| hypothetical protein | ALP40_02606 | Not Available | Positive | 1053011 - 1053136 | 4637.29 |
| gnat family acetyltransferase | ALP40_05010 | Not Available | Negative | 1053209 - 1053691 | 17786.0 |
| hypothetical protein | ALP40_02608 | Not Available | Negative | 1053740 - 1054138 | 15020.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
