Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phenylalanine--trna ligase alpha subunit | ALP40_02564 | Not Available | Positive | 1001700 - 1002716 | 38184.9 |
| phenylalanine--trna ligase beta subunit | ALP40_02565 | Not Available | Positive | 1002749 - 1005127 | 86540.0 |
| integration host factor subunit alpha | ALP40_02566 | Not Available | Positive | 1005131 - 1005433 | 11476.8 |
| putative transcriptional regulator | ALP40_100053 | Not Available | Positive | 1005414 - 1005770 | 13964.0 |
| Trna-pro | Not Available | Not Available | Positive | 1005859 - 1005935 | Not Available |
| hypothetical protein | ALP40_05005 | Not Available | Positive | 1006260 - 1006448 | 6894.53 |
| lipoprotein | ALP40_02567 | Not Available | Negative | 1006584 - 1007045 | 16573.2 |
| isothiocyanate resistance protein saxb | ALP40_02568 | Not Available | Negative | 1007313 - 1007864 | 19306.2 |
| aliphatic isothiocyanate resistance protein saxa | ALP40_05008 | Not Available | Negative | 1007949 - 1008899 | 34551.4 |
| arac family transcriptional regulator | ALP40_02569 | Not Available | Positive | 1008964 - 1009929 | 34893.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
