Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inosine/uridine-preferring nucleoside hydrolase | ALP40_02555 | Not Available | Positive | 995367 - 996392 | 36686.5 |
| hypothetical protein | ALP40_05001 | Not Available | Negative | 996415 - 996657 | 8733.49 |
| lipoprotein | ALP40_02557 | Not Available | Positive | 996849 - 997253 | 14228.0 |
| hypothetical protein | ALP40_05003 | Not Available | Negative | 997320 - 997532 | 7657.0 |
| hypothetical protein | ALP40_02559 | Not Available | Negative | 997826 - 998134 | 10657.7 |
| hypothetical protein | ALP40_100486 | Not Available | Negative | 998289 - 998441 | 5662.74 |
| threonine--trna ligase | ALP40_05004 | Not Available | Positive | 998449 - 1000404 | 73715.0 |
| translation initiation factor if-3 | ALP40_02561 | Not Available | Positive | 1000422 - 1000955 | 20066.6 |
| 50s ribosomal protein l35 | ALP40_02562 | Not Available | Positive | 1001016 - 1001210 | 7368.38 |
| 50s ribosomal protein l20 | ALP40_02563 | Not Available | Positive | 1001240 - 1001596 | 13314.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
