Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| major facilitator family transporter | ALP40_02533 | Not Available | Positive | 976298 - 977878 | 56757.9 |
| putative abc transporter lipoprotein | ALP40_02534 | Not Available | Positive | 977899 - 978954 | 36835.7 |
| nodt family efflux transporter outer membrane factor lipoprotein | ALP40_02535 | Not Available | Positive | 978951 - 980366 | 51465.9 |
| glutathione-regulated potassium-efflux system protein | ALP40_04993 | Not Available | Negative | 980369 - 982228 | 66770.1 |
| hypothetical protein | ALP40_04994 | Not Available | Positive | 982191 - 982622 | 15660.7 |
| hypothetical protein | ALP40_04995 | Not Available | Negative | 982640 - 983140 | 18635.8 |
| fecr protein super protein | ALP40_02539 | Not Available | Negative | 983237 - 984268 | 37756.8 |
| ureidoglycolate dehydrogenase | ALP40_02540 | Not Available | Positive | 984440 - 985549 | 38832.1 |
| hypothetical protein | ALP40_02541 | Not Available | Positive | 985617 - 985814 | 7081.47 |
| hypothetical protein | ALP40_02542 | Not Available | Positive | 985888 - 986214 | 11824.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
