Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycerophosphodiester phosphodiesterase | ALP40_02466 | Not Available | Negative | 891052 - 892290 | 45340.4 |
| d-isomer specific 2-hydroxyacid dehydrogenase | ALP40_04967 | Not Available | Positive | 892465 - 893463 | 34697.5 |
| antibiotic biosynthesis monooxygenase | ALP40_02468 | Not Available | Positive | 893662 - 893982 | 12135.2 |
| marr family transcriptional regulator | ALP40_02469 | Not Available | Positive | 894103 - 894594 | 18038.8 |
| short-chain fatty acid transporter | ALP40_04969 | Not Available | Negative | 894611 - 896029 | 50650.5 |
| 3-oxoacid coa-transferase | ALP40_02471 | Not Available | Negative | 896255 - 896911 | 23191.2 |
| 3-oxoacid coa-transferase, subunit a protein | ALP40_02472 | Not Available | Negative | 896970 - 897671 | 25299.7 |
| lysr family transcriptional regulator | ALP40_02473 | Not Available | Positive | 897795 - 898688 | 32946.2 |
| lipoprotein | ALP40_02474 | Not Available | Positive | 898787 - 899068 | 10454.3 |
| para-aminobenzoate synthase subunit i | ALP40_04970 | Not Available | Negative | 899136 - 900482 | 49100.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
