Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycolate oxidase fad binding subunit | ALP40_02378 | Not Available | Negative | 784020 - 785078 | 38205.6 |
| glycolate oxidase subunit glcd | ALP40_02379 | Not Available | Negative | 785078 - 786577 | 54074.4 |
| dna-binding transcriptional regulator glcc | ALP40_02380 | Not Available | Positive | 786951 - 787718 | 28655.4 |
| maleylacetoacetate isomerase | ALP40_02381 | Not Available | Positive | 787850 - 788494 | 24142.9 |
| 4-hydroxyphenylpyruvate dioxygenase | ALP40_02382 | Not Available | Positive | 788638 - 789717 | 40302.2 |
| iclr family transcriptional regulator | ALP40_04937 | Not Available | Negative | 789763 - 790551 | 27534.6 |
| homogentisate 1,2-dioxygenase | ALP40_04938 | Not Available | Positive | 790659 - 792005 | 49855.2 |
| fumarylacetoacetase | ALP40_04939 | Not Available | Positive | 791654 - 793294 | 59478.7 |
| n-acyl-d-amino acid deacylase protein | ALP40_02386 | Not Available | Negative | 793310 - 794776 | 53133.1 |
| transcriptional regulator aefr | ALP40_02387 | Not Available | Negative | 794802 - 795410 | 23046.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
