Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| oxidoreductase, molybdopterin binding protein | ALP40_02330 | Not Available | Positive | 729815 - 730585 | 29207.0 |
| iron abc transporter substrate-binding protein | ALP40_02331 | Not Available | Negative | 730710 - 731567 | 31474.4 |
| dyp-type peroxidase protein | ALP40_02332 | Not Available | Negative | 731564 - 732874 | 47425.1 |
| hypothetical protein | ALP40_02333 | Not Available | Negative | 732915 - 734123 | 43070.8 |
| membrane protein | ALP40_04921 | Not Available | Negative | 734132 - 734986 | 30517.8 |
| dna-3-methyladenine glycosylase ii | ALP40_04920 | Not Available | Positive | 735159 - 735920 | 27419.7 |
| beta-lactamase/d-alanine carboxypeptidase | ALP40_04923 | Not Available | Negative | 735917 - 737326 | 52164.5 |
| lysr family transcriptional regulator | ALP40_02335 | Not Available | Negative | 737328 - 738221 | 32478.6 |
| citrate transporter, citn protein | ALP40_04924 | Not Available | Positive | 738018 - 739670 | 59432.0 |
| hypothetical protein | ALP40_02337 | Not Available | Positive | 739671 - 741032 | 47947.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
