Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nucleoid-associated protein | ALP40_02300 | Not Available | Positive | 702609 - 702935 | 11681.3 |
| aldehyde dehydrogenase | ALP40_02301 | Not Available | Negative | 703083 - 704549 | 51462.7 |
| endoribonuclease l-psp | ALP40_02302 | Not Available | Negative | 704719 - 705114 | 13872.6 |
| hypothetical protein | ALP40_02303 | Not Available | Negative | 705104 - 706255 | 41459.4 |
| lysr family transcriptional regulator | ALP40_02304 | Not Available | Positive | 706351 - 707235 | 33012.0 |
| recombination protein recr | ALP40_02305 | Not Available | Positive | 707443 - 708045 | 21598.2 |
| flhb domain-containing protein | ALP40_02306 | Not Available | Negative | 708075 - 708398 | 11848.1 |
| hypothetical protein | ALP40_04915 | Not Available | Negative | 708398 - 710053 | 58648.4 |
| cytochrome c bioproteinsis atp-binding export protein ccma | ALP40_04916 | Not Available | Positive | 710139 - 710846 | 25481.8 |
| heme exporter protein b | ALP40_02309 | Not Available | Positive | 710843 - 711514 | 23236.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
