Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| helix-turn-helix, fis-type | ALP40_02270 | Not Available | Positive | 661763 - 663322 | 57139.4 |
| hypothetical protein | ALP40_02271 | Not Available | Negative | 663403 - 663669 | 9480.46 |
| acetyl-coenzyme a synthetase | ALP40_02272 | Not Available | Positive | 664015 - 665970 | 71642.3 |
| hypothetical protein | ALP40_02273 | Not Available | Positive | 666075 - 666245 | 6267.81 |
| arginine/ornithine abc transporter, periplasmic arginine/ornithine-binding protein | ALP40_02274 | Not Available | Positive | 666551 - 667327 | 28075.8 |
| amino acid abc transporter permease | ALP40_02275 | Not Available | Positive | 667411 - 668103 | 25050.5 |
| polar amino acid abc transporter permease | ALP40_02276 | Not Available | Positive | 668100 - 668798 | 25971.5 |
| succinylglutamate desuccinylase/aspartoacylase | ALP40_02277 | Not Available | Positive | 668800 - 669912 | 40495.5 |
| histidine abc transporter atp-binding protein | ALP40_02278 | Not Available | Positive | 669935 - 670699 | 27947.1 |
| transcriptional regulator argr | ALP40_02279 | Not Available | Positive | 670835 - 671824 | 36426.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
