Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator | ALP40_04901 | Not Available | Positive | 642411 - 643271 | 30777.5 |
| sensor histidine kinase/response regulator | ALP40_02252 | Not Available | Negative | 643282 - 645468 | 79506.9 |
| 1-aminocyclopropane-1-carboxylate deaminase | ALP40_04902 | Not Available | Negative | 645723 - 646850 | 40954.2 |
| regulatory protein, asnc/lrp | ALP40_04903 | Not Available | Positive | 646889 - 647416 | 19625.2 |
| membrane protein | ALP40_02255 | Not Available | Negative | 647490 - 648140 | 23227.9 |
| hypothetical protein | ALP40_02256 | Not Available | Positive | 648470 - 649378 | 31316.1 |
| hypothetical protein | ALP40_02257 | Not Available | Negative | 649632 - 650417 | 29642.5 |
| hypothetical protein | ALP40_04904 | Not Available | Negative | 650794 - 652077 | 46778.1 |
| ureidoglycolate lyase | ALP40_02259 | Not Available | Negative | 652106 - 652672 | 21294.2 |
| putative allantoicase | ALP40_02260 | Not Available | Negative | 652794 - 653789 | 36645.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
