Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | ALP40_02232 | Not Available | Negative | 616398 - 617144 | 27968.7 |
| efflux transporter, outer membrane factor lipoprotein | ALP40_04896 | Not Available | Negative | 617305 - 618804 | 53050.0 |
| regulatory protein, tetr | ALP40_04897 | Not Available | Positive | 618785 - 619465 | 25086.3 |
| secretion protein hlyd | ALP40_02235 | Not Available | Positive | 619540 - 620646 | 38056.5 |
| acriflavin resistance protein | ALP40_02236 | Not Available | Positive | 620643 - 623753 | 112966.0 |
| methyl-accepting chemotaxis protein | ALP40_02237 | Not Available | Positive | 624300 - 625919 | 57875.0 |
| hypothetical protein | ALP40_100688 | Not Available | Negative | 626002 - 626199 | 7221.66 |
| tetr family transcriptional regulator | ALP40_02238 | Not Available | Negative | 626301 - 626927 | 22493.0 |
| major facilitator family transporter | ALP40_04898 | Not Available | Positive | 626975 - 628243 | 44349.0 |
| epoxide hydrolase ycdj | ALP40_02240 | Not Available | Negative | 628283 - 629224 | 34671.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
