Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Major capsid protein | ALP40_00881 | Not Available | Positive | 3159912 - 3160922 | 36777.7 |
| hypothetical protein | ALP40_00882 | Not Available | Positive | 3160925 - 3161239 | 11410.8 |
| Hypothetical protein | ALP40_00883 | Not Available | Positive | 3161236 - 3161892 | 24451.4 |
| Putative minor tail protein | ALP40_00884 | Not Available | Positive | 3161885 - 3162415 | 19492.7 |
| Baseplate assembly protein v | ALP40_00885 | Not Available | Positive | 3162412 - 3162996 | 20388.8 |
| hypothetical protein | ALP40_00886 | Not Available | Positive | 3163039 - 3163299 | 9248.84 |
| Putative baseplate assembly protein w | ALP40_00887 | Not Available | Positive | 3163304 - 3163630 | 12082.7 |
| Baseplate assembly protein | ALP40_00888 | Not Available | Positive | 3163627 - 3164508 | 32006.1 |
| Tail protein i | ALP40_00889 | Not Available | Positive | 3164510 - 3165115 | 22262.6 |
| Tail fiber protein | ALP40_00890 | Not Available | Positive | 3165112 - 3166410 | 43612.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
