Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nudix family hydrolase | ALP40_02192 | Not Available | Negative | 548164 - 548706 | 19086.0 |
| hypothetical protein | ALP40_02193 | Not Available | Negative | 548935 - 549648 | 26666.2 |
| nicotinate-nucleotide adenylyltransferase | ALP40_02194 | Not Available | Negative | 549650 - 550195 | 19750.9 |
| isochorismatase | ALP40_02195 | Not Available | Positive | 550393 - 551034 | 23059.7 |
| nicotinate phosphoribosyltransferase | ALP40_02196 | Not Available | Positive | 551051 - 552256 | 45899.6 |
| nh synthetase | ALP40_02197 | Not Available | Positive | 552264 - 553100 | 29055.8 |
| aspartate carbamoyltransferase | ALP40_02198 | Not Available | Positive | 553272 - 554513 | 45862.8 |
| tonb-dependent siderophore receptor | ALP40_04891 | Not Available | Negative | 554592 - 556859 | 83319.2 |
| autotransporter serine protease | ALP40_02200 | Not Available | Negative | 557300 - 560413 | 107242.0 |
| outer membrane autotransporter barrel | ALP40_04895 | Not Available | Negative | 560504 - 563560 | 106056.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
