Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein sprt | ALP40_01733 | Not Available | Positive | 453652 - 454146 | 19330.2 |
| c4-dicarboxylate transport protein | ALP40_04796 | Not Available | Negative | 454236 - 455618 | 48580.9 |
| sensor histidine kinase | ALP40_01735 | Not Available | Negative | 456094 - 457440 | 50369.0 |
| dna-binding response regulator phop | ALP40_01736 | Not Available | Negative | 457437 - 458114 | 25378.8 |
| hypothetical protein | ALP40_01737 | Not Available | Negative | 458142 - 458492 | 12431.6 |
| dienelactone hydrolase | ALP40_01738 | Not Available | Positive | 458652 - 459440 | 28501.0 |
| 4'-phosphopantetheinyl transferase | ALP40_01739 | Not Available | Positive | 459686 - 460420 | 27117.7 |
| ferric iron reductase fhuf | ALP40_01740 | Not Available | Negative | 460504 - 460803 | 11197.7 |
| von willebrand factor type a domain protein | ALP40_100569 | Not Available | Negative | 460907 - 461417 | 19239.7 |
| hypothetical protein | ALP40_02128 | Not Available | Negative | 461410 - 461904 | 18481.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
