Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoribosylformylglycinamidine cyclo-ligase | ALP40_01713 | Not Available | Positive | 434783 - 435841 | 37012.9 |
| phosphoribosylglycinamide formyltransferase | ALP40_01714 | Not Available | Positive | 435841 - 436491 | 23494.3 |
| hypothetical protein | ALP40_01715 | Not Available | Positive | 436500 - 437213 | 26326.4 |
| hypothetical protein | ALP40_01716 | Not Available | Positive | 437646 - 437825 | 6863.86 |
| hypothetical protein | ALP40_01717 | Not Available | Negative | 437893 - 438435 | 20408.3 |
| nucleoside triphosphate pyrophosphohydrolase | ALP40_01718 | Not Available | Negative | 438462 - 439295 | 31495.3 |
| rela/spot protein | ALP40_01719 | Not Available | Negative | 439370 - 441613 | 83886.0 |
| 23s rrna -methyltransferase rlmd | ALP40_04789 | Not Available | Negative | 441771 - 443129 | 49507.8 |
| cysteine synthase | ALP40_01721 | Not Available | Negative | 443126 - 444028 | 32427.9 |
| pectate lyase | ALP40_04791 | Not Available | Positive | 444286 - 446994 | 98775.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
