Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aromatic hydrocarbon degradation protein | ALP40_01693 | Not Available | Positive | 414659 - 415942 | 45645.1 |
| glutathione peroxidase | ALP40_01694 | Not Available | Negative | 416349 - 416903 | 20370.5 |
| transporter | ALP40_01695 | Not Available | Negative | 417081 - 418289 | 42548.4 |
| cobalamin synthase | ALP40_01696 | Not Available | Negative | 418394 - 419125 | 25872.9 |
| alpha-ribazole-5'-phosphate phosphatase | ALP40_01697 | Not Available | Negative | 419127 - 419699 | 20777.8 |
| nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase | ALP40_01698 | Not Available | Negative | 419696 - 420748 | 36311.9 |
| adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase | ALP40_01699 | Not Available | Negative | 420745 - 421266 | 18847.0 |
| cobyric acid synthase | ALP40_01700 | Not Available | Negative | 421268 - 422728 | 52342.1 |
| threonine-phosphate decarboxylase | ALP40_01701 | Not Available | Negative | 422728 - 423729 | 37020.4 |
| cobalamin biosynthesis protein cobd | ALP40_01702 | Not Available | Negative | 423722 - 424630 | 32887.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
