Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoglycolate phosphatase | ALP40_01674 | Not Available | Positive | 395382 - 396053 | 24512.5 |
| oxoacyl- reductase | ALP40_01675 | Not Available | Positive | 396081 - 396821 | 26482.6 |
| diguanylate cye | ALP40_01676 | Not Available | Positive | 397064 - 398008 | 35215.4 |
| hypothetical protein | ALP40_04782 | Not Available | Negative | 398039 - 398824 | 29824.6 |
| sensory box/ggdef domain/eal domain-containing protein | ALP40_01678 | Not Available | Negative | 398855 - 401317 | 90805.5 |
| abc transporter transmembrane protein | ALP40_01679 | Not Available | Negative | 401441 - 403267 | 66900.0 |
| thioredoxin | ALP40_01680 | Not Available | Negative | 403260 - 403892 | 22872.2 |
| hypothetical protein | ALP40_01681 | Not Available | Negative | 403896 - 404849 | 35898.3 |
| bola protein | ALP40_01682 | Not Available | Negative | 405020 - 405313 | 10674.7 |
| hypothetical protein | ALP40_01683 | Not Available | Negative | 405326 - 405853 | 18807.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
