Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| integration host factor subunit beta | ALP40_01665 | Not Available | Negative | 381832 - 382125 | 10913.1 |
| 30s ribosomal protein s1 | ALP40_01666 | Not Available | Negative | 382422 - 384107 | 62018.6 |
| cytidylate kinase | ALP40_04779 | Not Available | Negative | 384230 - 385003 | 27556.0 |
| prephenate dehydrogenase | ALP40_01668 | Not Available | Negative | 384916 - 386511 | 56110.8 |
| chorismate mutase | ALP40_01669 | Not Available | Negative | 386587 - 387681 | 40326.5 |
| phosphoserine aminotransferase | ALP40_01670 | Not Available | Negative | 387681 - 388772 | 39986.6 |
| dna gyrase subunit a | ALP40_01671 | Not Available | Negative | 388972 - 391833 | 105233.0 |
| methylthioribose-1-phosphate isomerase | ALP40_100129 | Not Available | Negative | 392063 - 393175 | 40300.5 |
| n-ethylammeline chlorohydrolase | ALP40_01672 | Not Available | Positive | 393257 - 394597 | 48300.0 |
| ubiquinone biosynthesis o-methyltransferase | ALP40_01673 | Not Available | Positive | 394680 - 395378 | 25910.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
