Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phospho-2-dehydro-3-deoxyheptonate aldolase | ALP40_04775 | Not Available | Positive | 361585 - 362931 | 49938.2 |
| hypothetical protein | ALP40_01647 | Not Available | Negative | 362939 - 364147 | 45772.0 |
| hypothetical protein | ALP40_01648 | Not Available | Negative | 364198 - 364431 | 9068.04 |
| lysr family transcriptional regulator | ALP40_01649 | Not Available | Positive | 364518 - 365372 | 31616.3 |
| putative membrane protein | ALP40_100160 | Not Available | Negative | 365362 - 366168 | 28792.5 |
| marr family transcriptional regulator | ALP40_01650 | Not Available | Positive | 366294 - 366773 | 17572.4 |
| organic hydroperoxide resistance protein | ALP40_01651 | Not Available | Positive | 367115 - 367534 | 14239.9 |
| lipase | ALP40_01652 | Not Available | Positive | 367560 - 368579 | 36373.4 |
| elongation factor p | ALP40_01653 | Not Available | Negative | 368657 - 369226 | 21139.1 |
| hypothetical protein | ALP40_01654 | Not Available | Negative | 369326 - 370459 | 42837.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
