Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| response regulator receiver:atp-binding region | ALP40_01638 | Not Available | Positive | 350938 - 353289 | 86435.1 |
| glutathione peroxidase | ALP40_01639 | Not Available | Negative | 353311 - 353796 | 17798.6 |
| peptide methionine sulfoxide reductase msrb | ALP40_04770 | Not Available | Negative | 353924 - 354469 | 20194.0 |
| aminotransferase alat | ALP40_04771 | Not Available | Positive | 354346 - 355722 | 50921.5 |
| protease htpx | ALP40_01642 | Not Available | Positive | 355991 - 356878 | 32399.8 |
| thiopurine s-methyltransferase | ALP40_01643 | Not Available | Negative | 356949 - 357608 | 25049.9 |
| catalytic ligb subunit of aromatic ring-opening dioxygenase | ALP40_01644 | Not Available | Positive | 357712 - 358479 | 28019.6 |
| atp-dependent rna helicase dead | ALP40_04772 | Not Available | Negative | 358557 - 360254 | 61583.8 |
| chemotaxis protein motb | ALP40_100395 | Not Available | Positive | 360180 - 360707 | 19198.4 |
| hypothetical protein | ALP40_04776 | Not Available | Negative | 360662 - 361552 | 32931.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
