Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitroreductase | ALP40_01623 | Not Available | Negative | 332484 - 333044 | 19893.2 |
| trk system potassium uptake protein | ALP40_01624 | Not Available | Positive | 333219 - 334673 | 53076.2 |
| hypothetical protein | ALP40_01625 | Not Available | Positive | 335027 - 335338 | 12082.8 |
| ser/thr protein phosphatase | ALP40_01626 | Not Available | Negative | 335342 - 336169 | 31650.8 |
| drug/metabolite exporter family transporter | ALP40_01627 | Not Available | Positive | 336302 - 337177 | 30523.7 |
| putative selenoprotein | ALP40_04769 | Not Available | Negative | 337171 - 337473 | 11057.0 |
| lysr family transcriptional regulator | ALP40_01628 | Not Available | Negative | 337535 - 338443 | 33801.6 |
| cyclic nucleotide-regulated small mechanosensitive ion channel | ALP40_01629 | Not Available | Positive | 338562 - 339989 | 51036.3 |
| arac family transcriptional regulator | ALP40_01630 | Not Available | Positive | 340150 - 340587 | 16017.0 |
| transcriptional regulator | ALP40_01631 | Not Available | Positive | 340650 - 343424 | 102355.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
