Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dnaj domain-containing protein | ALP40_05250 | Not Available | Positive | 262814 - 263860 | 37983.3 |
| hypothetical protein | ALP40_03665 | Not Available | Positive | 264387 - 264713 | 11865.3 |
| sam-dependent methyltransferase | ALP40_100407 | Not Available | Negative | 265011 - 266228 | 46097.0 |
| amino acid abc transporter permease | ALP40_03666 | Not Available | Negative | 266283 - 266972 | 25583.2 |
| amino acid abc transporter permease | ALP40_03667 | Not Available | Negative | 266969 - 267664 | 24615.2 |
| amino acid abc transporter substrate-binding protein | ALP40_03668 | Not Available | Negative | 267731 - 268492 | 28071.5 |
| amino acid abc transporter atp-binding protein | ALP40_03669 | Not Available | Negative | 268506 - 269279 | 28386.4 |
| gaba permease | ALP40_03670 | Not Available | Positive | 269812 - 271203 | 49610.7 |
| hypothetical protein | ALP40_03671 | Not Available | Negative | 271340 - 271825 | 18177.6 |
| methyl-accepting chemotaxis protein | ALP40_03672 | Not Available | Negative | 271994 - 273340 | 48737.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
