Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid adenylation | ALP40_04240 | Not Available | Positive | 252441 - 256481 | 146649.0 |
| abc transporter periplasmic substrate-binding protein | ALP40_04241 | Not Available | Positive | 257160 - 257939 | 27258.0 |
| hypothetical protein | ALP40_200014 | Not Available | Positive | 258301 - 258753 | 17045.2 |
| hypothetical protein | ALP40_200055 | Not Available | Positive | 258883 - 259224 | 11483.3 |
| hypothetical protein | ALP40_200079 | Not Available | Negative | 259234 - 259413 | 6750.28 |
| pyoverdine sidechain peptide synthetase ii, d-asp-l-thr component | ALP40_04100 | Not Available | Positive | 259499 - 260237 | 27204.9 |
| ispsy5, transposase | ALP40_03662 | Not Available | Positive | 260238 - 260520 | 10623.5 |
| hypothetical protein | ALP40_03663 | Not Available | Negative | 260613 - 260843 | 8137.81 |
| hypothetical protein | ALP40_100748 | Not Available | Positive | 261115 - 261432 | 11392.8 |
| Trna-thr | Not Available | Not Available | Positive | 261958 - 262033 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
