Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Holin | ALP40_100298 | Not Available | Negative | 2176167 - 2176877 | 26336.4 |
| hypothetical protein | ALP40_03459 | Not Available | Negative | 2176861 - 2177298 | 15775.0 |
| Repressor protein | ALP40_03460 | Not Available | Positive | 2177431 - 2178087 | 24441.7 |
| Hypothetical protein | ALP40_03461 | Not Available | Positive | 2178236 - 2178493 | 9562.17 |
| prophage psssm-04, putative transcriptional regulator | ALP40_100029 | Not Available | Positive | 2178743 - 2179048 | 11395.8 |
| Attl | Not Available | Not Available | Positive | 3137093 - 3137107 | Not Available |
| Tyrosine family integrase | ALP40_00859 | Not Available | Positive | 3137216 - 3138265 | 39548.6 |
| Chromosome partitioning atpase | ALP40_00860 | Not Available | Positive | 3138480 - 3139445 | 36111.2 |
| Hypothetical protein | ALP40_00861 | Not Available | Negative | 3141121 - 3141741 | 23074.4 |
| hypothetical protein | ALP40_00862 | Not Available | Negative | 3141738 - 3142244 | 18936.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
