Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rod shape-determining protein mred | ALP40_04195 | Not Available | Negative | 202611 - 203102 | 18501.7 |
| rod shape-determining protein mrec | ALP40_05394 | Not Available | Negative | 203095 - 204231 | 40756.4 |
| rod shape-determining protein mreb | ALP40_04196 | Not Available | Negative | 204386 - 205423 | 36989.8 |
| aspartyl/glutamyl-trna amidotransferase subunit c | ALP40_04197 | Not Available | Positive | 205630 - 205917 | 10519.6 |
| glutamyl-trna amidotransferase subunit a | ALP40_04198 | Not Available | Positive | 205932 - 207383 | 51908.8 |
| aspartyl/glutamyl-trna amidotransferase subunit b | ALP40_05396 | Not Available | Positive | 207178 - 208839 | 60959.8 |
| rpla protein | ALP40_04200 | Not Available | Positive | 209013 - 209456 | 16385.5 |
| k+-dependent na+/ca+ exchanger-like protein | ALP40_04201 | Not Available | Positive | 209510 - 210541 | 35954.1 |
| carboxymuconolactone decarboxylase | ALP40_05397 | Not Available | Positive | 210581 - 210982 | 14559.2 |
| auxin efflux carrier | ALP40_05398 | Not Available | Negative | 210979 - 212004 | 36554.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
