Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atpase | ALP40_04155 | Not Available | Negative | 163607 - 164701 | 42091.5 |
| tryptophan--trna ligase | ALP40_04156 | Not Available | Negative | 164763 - 166112 | 49238.5 |
| hypothetical protein | ALP40_04157 | Not Available | Negative | 166140 - 166775 | 22946.5 |
| hypothetical protein | ALP40_04158 | Not Available | Positive | 166914 - 167348 | 16236.2 |
| sulfate adenylyltransferase subunit 1 | ALP40_04159 | Not Available | Negative | 167499 - 169397 | 69071.2 |
| sulfate adenylyltransferase subunit 2 | ALP40_04160 | Not Available | Negative | 169410 - 170327 | 35284.3 |
| putative gtp cyclohydrolase 1 type 2 | ALP40_04161 | Not Available | Negative | 170479 - 171237 | 27647.1 |
| serine protease | ALP40_04162 | Not Available | Positive | 171348 - 172508 | 40936.6 |
| histidinol-phosphate aminotransferase | ALP40_04163 | Not Available | Negative | 172632 - 173684 | 38921.4 |
| histidinol dehydrogenase | ALP40_04164 | Not Available | Negative | 173684 - 175030 | 48104.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
