Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Tail protein | ALP40_03450 | Not Available | Negative | 2167538 - 2168644 | 40075.5 |
| Tail/dna circulation protein | ALP40_03451 | Not Available | Negative | 2168648 - 2170132 | 51600.2 |
| Putative tail protein | ALP40_03452 | Not Available | Negative | 2170129 - 2172636 | 88260.9 |
| hypothetical protein | ALP40_100373 | Not Available | Negative | 2172636 - 2172821 | 6947.34 |
| Putative bacteriophage protein | ALP40_03453 | Not Available | Negative | 2172767 - 2173063 | 10584.7 |
| Tail tube protein | ALP40_03454 | Not Available | Negative | 2173060 - 2173407 | 12512.9 |
| Tail sheath protein | ALP40_03455 | Not Available | Negative | 2173474 - 2174970 | 53290.2 |
| Hypothetical protein | ALP40_03456 | Not Available | Negative | 2174989 - 2175174 | 6722.72 |
| Hypothetical protein | ALP40_03457 | Not Available | Negative | 2175171 - 2175761 | 21441.2 |
| Lipoprotein | ALP40_03458 | Not Available | Negative | 2175848 - 2176186 | 12318.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
