Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| arginine biosynthesis bifunctional protein argj | ALP40_04127 | Not Available | Negative | 129094 - 130311 | 42432.7 |
| protein translocase subunit seca | ALP40_04128 | Not Available | Negative | 130421 - 133177 | 104086.0 |
| hypothetical protein | ALP40_05387 | Not Available | Positive | 133420 - 133920 | 19026.2 |
| udp-3-o- n-acetylglucosamine deacetylase | ALP40_04130 | Not Available | Negative | 134014 - 134925 | 33200.7 |
| cell division protein ftsz | ALP40_04131 | Not Available | Negative | 135038 - 136225 | 41511.1 |
| cell division protein ftsa | ALP40_04132 | Not Available | Negative | 136296 - 137552 | 44532.7 |
| udp-n-acetylmuramate--l-alanine ligase | ALP40_04133 | Not Available | Negative | 139390 - 140850 | 52760.7 |
| udp-n-acetylglucosamine--n-acetylmuramyl- pyrophosphoryl-undecaprenol n-acetylglucosamine transferase | ALP40_04134 | Not Available | Negative | 140843 - 141913 | 37900.3 |
| lipid ii flippase ftsw | ALP40_04135 | Not Available | Negative | 141903 - 143117 | 44049.0 |
| udp-n-acetylmuramoylalanine--d-glutamate ligase | ALP40_04136 | Not Available | Negative | 143114 - 144460 | 48082.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
