Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| methylated-dna--cysteine s-methyltransferase | ALP40_04118 | Not Available | Positive | 119645 - 120013 | 13113.9 |
| ampg-related permease | ALP40_04119 | Not Available | Positive | 120056 - 121606 | 56473.4 |
| hypothetical protein | ALP40_04120 | Not Available | Positive | 121679 - 121990 | 11037.0 |
| mechanosensitive ion channel protein | ALP40_04121 | Not Available | Negative | 122071 - 122901 | 29765.7 |
| hypothetical protein | ALP40_100047 | Not Available | Negative | 123021 - 123533 | 19319.5 |
| 2-dehydropantoate 2-reductase | ALP40_04122 | Not Available | Positive | 123672 - 124592 | 33125.8 |
| sensory box histidine kinase | ALP40_04123 | Not Available | Positive | 124637 - 126673 | 75772.9 |
| hypothetical protein | ALP40_04124 | Not Available | Positive | 126689 - 127267 | 20814.1 |
| hypothetical protein | ALP40_04125 | Not Available | Negative | 127467 - 128414 | 33958.7 |
| glutathione s-transferase protein | ALP40_04126 | Not Available | Negative | 128417 - 129055 | 24028.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
