Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| inaa protein | ALP40_100510 | Not Available | Negative | 109815 - 110534 | 27228.4 |
| hypothetical protein | ALP40_04110 | Not Available | Negative | 110539 - 111219 | 26463.9 |
| sensor histidine kinase | ALP40_04111 | Not Available | Negative | 111405 - 112694 | 47929.3 |
| response regulator receiver:transcriptional regulatory protein | ALP40_04112 | Not Available | Negative | 112684 - 113367 | 25533.0 |
| pap2 super protein | ALP40_04113 | Not Available | Positive | 113546 - 114277 | 26995.5 |
| 60 kda chaperonin | ALP40_04114 | Not Available | Negative | 114556 - 116205 | 57355.5 |
| 10 kda chaperonin | ALP40_04115 | Not Available | Negative | 116249 - 116542 | 10282.4 |
| phage t7 f exclusion suppressor fxsa | ALP40_04116 | Not Available | Negative | 116798 - 117295 | 18595.3 |
| 3-ketoacyl-acp reductase | ALP40_04117 | Not Available | Positive | 117648 - 118418 | 27258.3 |
| peptide chain release factor rf-3 | ALP40_100143 | Not Available | Negative | 118476 - 119483 | 37435.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
