Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcription factor jumonji, jmjc | ALP40_01253 | Not Available | Positive | 75341 - 76555 | 45488.9 |
| gnat family acetyltransferase | ALP40_01254 | Not Available | Positive | 76548 - 76970 | 15856.1 |
| nolw-like protein | ALP40_01255 | Not Available | Positive | 77157 - 77894 | 26440.9 |
| isocitrate lyase | ALP40_01256 | Not Available | Positive | 78420 - 79745 | 48628.4 |
| putative proteinh-quinone oxidoreductase subunit a | ALP40_01257 | Not Available | Positive | 80196 - 80609 | 15143.8 |
| putative proteinh-quinone oxidoreductase subunit b | ALP40_01258 | Not Available | Positive | 80614 - 81294 | 25605.8 |
| putative proteinh-quinone oxidoreductase subunit c/d | ALP40_01259 | Not Available | Positive | 81369 - 83150 | 67744.4 |
| putative proteinh dehydrogenase subunit e | ALP40_01260 | Not Available | Positive | 83153 - 83650 | 17925.4 |
| putative proteinh dehydrogenase i subunit f | ALP40_01261 | Not Available | Positive | 83647 - 85005 | 49016.9 |
| putative proteinh-quinone oxidoreductase | ALP40_01262 | Not Available | Positive | 85144 - 87861 | 98432.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
