Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pseudomonas viridiflava strain ICMP 19473 PvrICMP19473_Contig_14,
Gene Summary
Adenine Count
1156687 bp
Thymine Count
1166572 bp
Guanine Count
1680011 bp
Cytosine Count
1663355 bp
Genome Length
5672890 bp
Protein-coding Genes
4669 genes
Non-Coding Genes
113 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| leucyl/phenylalanyl-trna--protein transferase | ALP40_01243 | Not Available | Positive | 63426 - 64124 | 26547.7 |
| putative arginyl-trna--protein transferase | ALP40_01244 | Not Available | Positive | 64174 - 64881 | 27807.3 |
| translation initiation factor if-1 | ALP40_01245 | Not Available | Positive | 64983 - 65201 | 8303.06 |
| atp-dependent clp protease atp-binding subunit clpa | ALP40_01246 | Not Available | Negative | 65317 - 67590 | 83530.8 |
| atp-dependent clp protease adapter protein clps | ALP40_01247 | Not Available | Negative | 67621 - 67983 | 13545.2 |
| isocitrate dehydrogenase | ALP40_01248 | Not Available | Positive | 69237 - 71462 | 80684.2 |
| nudix hydrolase | ALP40_01249 | Not Available | Positive | 71567 - 72013 | 16993.1 |
| pp_00052 | ALP40_01250 | Not Available | Positive | 72074 - 73204 | Not Available |
| high frequency lysogenization protein hfld -like protein | ALP40_01251 | Not Available | Positive | 73204 - 73824 | 23024.2 |
| adenylosuccinate lyase | ALP40_01252 | Not Available | Positive | 73957 - 75327 | 50889.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
