Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1289 domain-containing protein | PviCFBP13507_04680 | Not Available | Positive | 1067684 - 1067902 | 7967.55 |
| preq0 transporter | PviCFBP13507_04685 | Not Available | Positive | 1068041 - 1068508 | 16997.2 |
| formate-dependent phosphoribosylglycinamide formyltransferase | PviCFBP13507_04690 | Not Available | Positive | 1068612 - 1069793 | 42224.7 |
| mfs transporter | PviCFBP13507_04695 | Not Available | Negative | 1069836 - 1071155 | 46675.8 |
| duf21 domain-containing protein | PviCFBP13507_04700 | Not Available | Negative | 1071456 - 1072700 | 46353.3 |
| inner membrane protein ypjd | PviCFBP13507_04705 | Not Available | Negative | 1072713 - 1073525 | 29692.4 |
| signal recognition particle protein | PviCFBP13507_04710 | Not Available | Positive | 1073739 - 1075115 | 49376.8 |
| 30s ribosomal protein s16 | PviCFBP13507_04715 | Not Available | Positive | 1075363 - 1075620 | 9550.39 |
| ribosome maturation factor rimm | PviCFBP13507_04720 | Not Available | Positive | 1075626 - 1076165 | 20066.0 |
| trna (guanosine(37)-n1)-methyltransferase trmd | PviCFBP13507_04725 | Not Available | Positive | 1076171 - 1076923 | 28035.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
