Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fe-s cluster assembly transcriptional regulator iscr | PviCFBP13507_04470 | Not Available | Positive | 1023485 - 1023976 | 17865.3 |
| iscs subfamily cysteine desulfurase | PviCFBP13507_04475 | Not Available | Positive | 1024021 - 1025235 | 44412.9 |
| fe-s cluster assembly scaffold iscu | PviCFBP13507_04480 | Not Available | Positive | 1025322 - 1025708 | 13856.6 |
| iron-sulfur cluster assembly protein isca | PviCFBP13507_04485 | Not Available | Positive | 1025743 - 1026066 | 11547.6 |
| co-chaperone hscb | PviCFBP13507_04490 | Not Available | Positive | 1026077 - 1026598 | 20270.8 |
| fe-s protein assembly chaperone hsca | PviCFBP13507_04495 | Not Available | Positive | 1026645 - 1028507 | 66360.6 |
| isc system 2fe-2s type ferredoxin | PviCFBP13507_04500 | Not Available | Positive | 1028511 - 1028852 | 12329.5 |
| fe-s assembly protein iscx | PviCFBP13507_04505 | Not Available | Positive | 1028867 - 1029067 | 7671.03 |
| nucleoside-diphosphate kinase | PviCFBP13507_04510 | Not Available | Positive | 1029164 - 1029589 | 14951.7 |
| 23s rrna (adenine(2503)-c(2))-methyltransferase rlmn | PviCFBP13507_04515 | Not Available | Positive | 1029621 - 1030769 | 42299.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
