Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| escv/yscv/hrcv family type iii secretion system export apparatus protein | PviCFBP13507_04365 | Not Available | Negative | 1002708 - 1004807 | 76564.1 |
| tyea family type iii secretion system gatekeeper subunit | PviCFBP13507_04370 | Not Available | Negative | 1004807 - 1005910 | 41007.7 |
| rna polymerase sigma factor | PviCFBP13507_04375 | Not Available | Positive | 1006155 - 1006709 | 21116.3 |
| type iii effector hrpk | PviCFBP13507_04380 | Not Available | Positive | 1006796 - 1009075 | 79404.7 |
| type iii chaperone protein shca | PviCFBP13507_04385 | Not Available | Positive | 1009213 - 1009593 | 14017.1 |
| type iii effector | PviCFBP13507_04390 | Not Available | Positive | 1009607 - 1010755 | 41771.5 |
| hypothetical protein | PviCFBP13507_04395 | Not Available | Negative | 1010959 - 1011282 | 11720.9 |
| hypothetical protein | PviCFBP13507_04400 | Not Available | Negative | 1011477 - 1011782 | 11240.3 |
| ethanolamine utilization protein | PviCFBP13507_04405 | Not Available | Positive | 1012302 - 1012721 | 14763.2 |
| hypothetical protein | PviCFBP13507_04410 | Not Available | Negative | 1013095 - 1014153 | 39598.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
