Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| escu/yscu/hrcu family type iii secretion system export apparatus switch protein | PviCFBP13507_04315 | Not Available | Negative | 995408 - 996487 | 39995.2 |
| esct/ysct/hrct family type iii secretion system export apparatus protein | PviCFBP13507_04320 | Not Available | Negative | 996484 - 997278 | 28624.3 |
| escs/yscs/hrcs family type iii secretion system export apparatus protein | PviCFBP13507_04325 | Not Available | Negative | 997279 - 997545 | 9394.05 |
| escr/yscr/hrcr family type iii secretion system export apparatus protein | PviCFBP13507_04330 | Not Available | Negative | 997553 - 998206 | 24161.5 |
| type iii secretion system protein | PviCFBP13507_04335 | Not Available | Negative | 998203 - 998595 | 14117.1 |
| type iii secretion system protein | PviCFBP13507_04340 | Not Available | Negative | 998585 - 999301 | 25848.7 |
| type iii secretion protein | PviCFBP13507_04345 | Not Available | Negative | 999298 - 999891 | 21451.4 |
| type iii secretion protein | PviCFBP13507_04350 | Not Available | Negative | 999898 - 1000344 | 17169.3 |
| escn/yscn/hrcn family type iii secretion system atpase | PviCFBP13507_04355 | Not Available | Negative | 1000348 - 1001697 | 48331.5 |
| escd/yscd/hrpq family type iii secretion system inner membrane ring protein | PviCFBP13507_04360 | Not Available | Negative | 1001694 - 1002674 | 35502.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
