Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion protein hrpz | PviCFBP13507_04265 | Not Available | Positive | 988151 - 989164 | 34443.3 |
| esci/ysci/hrpb family type iii secretion system inner rod protein | PviCFBP13507_04270 | Not Available | Positive | 989191 - 989565 | 12977.5 |
| escj/yscj/hrcj family type iii secretion inner membrane ring protein | PviCFBP13507_04275 | Not Available | Positive | 989575 - 990381 | 29255.8 |
| type iii secretion protein | PviCFBP13507_04280 | Not Available | Positive | 990378 - 990908 | 20145.1 |
| hrpe/yscl family type iii secretion apparatus protein | PviCFBP13507_04285 | Not Available | Positive | 990949 - 991530 | 21304.3 |
| type iii secretion protein | PviCFBP13507_04290 | Not Available | Positive | 991614 - 991838 | 7856.05 |
| type iii secretion protein | PviCFBP13507_04295 | Not Available | Positive | 991816 - 992256 | 15725.7 |
| escc/yscc/hrcc family type iii secretion system outer membrane ring protein | PviCFBP13507_04300 | Not Available | Positive | 992258 - 994351 | 76447.5 |
| type iii secretion protein | PviCFBP13507_04305 | Not Available | Positive | 994348 - 994551 | 7615.09 |
| type iii secretion protein hrpv | PviCFBP13507_04310 | Not Available | Positive | 994554 - 994901 | 13194.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
