Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| effector protein | PviCFBP13507_04210 | Not Available | Negative | 969880 - 970827 | 35363.5 |
| type iii effector | PviCFBP13507_04215 | Not Available | Positive | 971190 - 972626 | 50075.5 |
| type iii effector hrpk | PviCFBP13507_04220 | Not Available | Negative | 972694 - 973935 | 41727.8 |
| type iii chaperone shcm | PviCFBP13507_04225 | Not Available | Positive | 974230 - 974727 | 18363.8 |
| cest family type iii secretion system chaperone | PviCFBP13507_04235 | Not Available | Positive | 977283 - 977672 | 14212.9 |
| avre family type 3 secretion system effector | PviCFBP13507_04240 | Not Available | Negative | 977730 - 982952 | 189383.0 |
| lytic transglycosylase | PviCFBP13507_04245 | Not Available | Positive | 983173 - 984702 | 55859.7 |
| sigma-54-dependent fis family transcriptional regulator | PviCFBP13507_04250 | Not Available | Positive | 985785 - 986720 | 34623.8 |
| sigma-54-dependent fis family transcriptional regulator | PviCFBP13507_04255 | Not Available | Positive | 986767 - 987678 | 33593.6 |
| hypothetical protein | PviCFBP13507_04260 | Not Available | Positive | 987773 - 988099 | 11297.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
