Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| d-hexose-6-phosphate mutarotase | PviCFBP13507_03960 | Not Available | Positive | 919917 - 920792 | 32601.1 |
| transcriptional regulator hexr | PviCFBP13507_03965 | Not Available | Negative | 920918 - 921784 | 31422.0 |
| glucose-6-phosphate dehydrogenase | PviCFBP13507_03970 | Not Available | Positive | 922003 - 923472 | 55396.2 |
| 6-phosphogluconolactonase | PviCFBP13507_03975 | Not Available | Positive | 923459 - 924172 | 25133.3 |
| keto-deoxy-phosphogluconate aldolase | PviCFBP13507_03980 | Not Available | Positive | 924190 - 924861 | 23723.8 |
| hypothetical protein | PviCFBP13507_03985 | Not Available | Negative | 925167 - 925409 | 9122.16 |
| duf2383 domain-containing protein | PviCFBP13507_03990 | Not Available | Positive | 925629 - 926099 | 16981.9 |
| ggdef domain-containing protein | PviCFBP13507_03995 | Not Available | Negative | 926165 - 927691 | 56368.5 |
| hamp domain-containing protein | PviCFBP13507_04000 | Not Available | Negative | 927891 - 929255 | 50658.8 |
| dna-binding response regulator | PviCFBP13507_04005 | Not Available | Negative | 929245 - 929922 | 25234.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
