Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i glyceraldehyde-3-phosphate dehydrogenase | PviCFBP13507_03910 | Not Available | Negative | 907610 - 908611 | 36277.2 |
| phosphogluconate dehydratase | PviCFBP13507_03915 | Not Available | Positive | 908831 - 910657 | 65444.2 |
| glucokinase | PviCFBP13507_03920 | Not Available | Positive | 910654 - 911619 | 34350.6 |
| dna-binding response regulator | PviCFBP13507_03925 | Not Available | Positive | 911668 - 912405 | 27476.9 |
| hamp domain-containing protein | PviCFBP13507_03930 | Not Available | Positive | 912467 - 913873 | 52345.5 |
| carbohydrate abc transporter substrate-binding protein | PviCFBP13507_03935 | Not Available | Positive | 914003 - 915289 | 45638.3 |
| sugar abc transporter permease | PviCFBP13507_03940 | Not Available | Positive | 915394 - 916302 | 33755.1 |
| carbohydrate abc transporter permease | PviCFBP13507_03945 | Not Available | Positive | 916295 - 917140 | 30585.2 |
| abc transporter atp-binding protein | PviCFBP13507_03950 | Not Available | Positive | 917143 - 918303 | 42165.4 |
| porin | PviCFBP13507_03955 | Not Available | Positive | 918431 - 919792 | 50747.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
