Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hu family dna-binding protein | PviCFBP13507_03810 | Not Available | Positive | 883153 - 883434 | 9789.92 |
| 23s rrna (adenine(1618)-n(6))-methyltransferase rlmf | PviCFBP13507_03815 | Not Available | Negative | 884054 - 885067 | 37294.7 |
| valine--trna ligase | PviCFBP13507_03820 | Not Available | Negative | 885232 - 888078 | 107090.0 |
| rhs repeat-associated core domain-containing protein | PviCFBP13507_03825 | Not Available | Positive | 888259 - 889359 | 40719.5 |
| dna polymerase iii subunit chi | PviCFBP13507_03830 | Not Available | Negative | 889406 - 889855 | 16515.4 |
| dna polymerase iii subunit chi | PviCFBP13507_03835 | Not Available | Negative | 889863 - 890291 | 16354.4 |
| leucyl aminopeptidase | PviCFBP13507_03840 | Not Available | Negative | 890349 - 891839 | 52320.6 |
| lps export abc transporter permease lptf | PviCFBP13507_03845 | Not Available | Positive | 892158 - 893279 | 41493.5 |
| lps export abc transporter permease lptg | PviCFBP13507_03850 | Not Available | Positive | 893272 - 894333 | 38742.5 |
| hypothetical protein | PviCFBP13507_03855 | Not Available | Negative | 894391 - 894876 | 18049.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
