Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase subunit sigma | PviCFBP13507_03560 | Not Available | Negative | 829354 - 829857 | 18579.4 |
| duf3649 domain-containing protein | PviCFBP13507_03565 | Not Available | Positive | 830032 - 830373 | 12031.2 |
| peptidase | PviCFBP13507_03570 | Not Available | Positive | 830370 - 831944 | 57924.8 |
| duf3325 domain-containing protein | PviCFBP13507_03575 | Not Available | Positive | 831944 - 832273 | 11960.3 |
| arac family transcriptional regulator | PviCFBP13507_03580 | Not Available | Negative | 832270 - 833148 | 32657.0 |
| eama family transporter | PviCFBP13507_03585 | Not Available | Positive | 833285 - 834196 | 32692.0 |
| bifunctional glyoxylate/hydroxypyruvate reductase b | PviCFBP13507_03590 | Not Available | Negative | 834291 - 835265 | 35445.6 |
| lysr family transcriptional regulator | PviCFBP13507_03595 | Not Available | Negative | 835354 - 836301 | 34538.5 |
| rnd transporter | PviCFBP13507_03600 | Not Available | Positive | 836499 - 837989 | 53380.7 |
| fusc family protein | PviCFBP13507_03605 | Not Available | Positive | 837991 - 840177 | 81226.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
