Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cyclase/dehydrase | PviCFBP13507_02605 | Not Available | Positive | 624234 - 625088 | 31051.9 |
| glutathione-dependent formaldehyde dehydrogenase | PviCFBP13507_02610 | Not Available | Positive | 625088 - 626257 | 41924.2 |
| cupin domain-containing protein | PviCFBP13507_02615 | Not Available | Negative | 626285 - 626851 | 20746.9 |
| duf1264 domain-containing protein | PviCFBP13507_02620 | Not Available | Negative | 626897 - 627739 | 30778.6 |
| metallothionein | PviCFBP13507_02625 | Not Available | Negative | 627779 - 628003 | 8016.01 |
| tonb-dependent receptor | PviCFBP13507_02630 | Not Available | Positive | 628280 - 630397 | 77066.1 |
| cupin domain-containing protein | PviCFBP13507_02635 | Not Available | Negative | 630418 - 630966 | 20070.8 |
| peptidase c26 | PviCFBP13507_02640 | Not Available | Negative | 631070 - 631831 | 27121.4 |
| lysr family transcriptional regulator | PviCFBP13507_02645 | Not Available | Positive | 631966 - 632841 | 31503.9 |
| aromatic ring-hydroxylating dioxygenase subunit alpha | PviCFBP13507_02650 | Not Available | Positive | 633180 - 634244 | 39728.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
