Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | PviCFBP13507_26545 | Not Available | Positive | 5857308 - 5857493 | 7085.99 |
| type vi secretion system tip protein vgrg | PviCFBP13507_26550 | Not Available | Positive | 5857538 - 5857843 | 11471.8 |
| type iv secretion protein rhs | PviCFBP13507_26555 | Not Available | Negative | 5857844 - 5861155 | 122065.0 |
| duf1795 domain-containing protein | PviCFBP13507_26560 | Not Available | Negative | 5861168 - 5861593 | 15808.0 |
| type vi secretion system tip protein vgrg | PviCFBP13507_26565 | Not Available | Negative | 5861609 - 5862749 | 41201.3 |
| hypothetical protein | PviCFBP13507_26580 | Not Available | Negative | 5867822 - 5868484 | 25417.1 |
| type iv secretion protein rhs | PviCFBP13507_26585 | Not Available | Negative | 5868466 - 5869547 | 40373.3 |
| is3 family transposase | PviCFBP13507_26590 | Not Available | Negative | 5869588 - 5870942 | 51877.6 |
| is3 family transposase | PviCFBP13507_26595 | Not Available | Negative | 5871015 - 5872366 | 52078.0 |
| is3 family transposase | PviCFBP13507_26600 | Not Available | Positive | 5872481 - 5873628 | 44163.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
