Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exodeoxyribonuclease v subunit gamma | PviCFBP13507_25945 | Not Available | Negative | 5706028 - 5709504 | 130284.0 |
| serine hydroxymethyltransferase | PviCFBP13507_25950 | Not Available | Positive | 5710331 - 5711584 | 44813.3 |
| sarcosine oxidase subunit beta | PviCFBP13507_25955 | Not Available | Positive | 5711602 - 5712852 | 45340.2 |
| sarcosine oxidase subunit delta family protein | PviCFBP13507_25960 | Not Available | Positive | 5712866 - 5713162 | 11347.3 |
| sarcosine oxidase subunit alpha | PviCFBP13507_25965 | Not Available | Positive | 5713159 - 5716179 | 109560.0 |
| sarcosine oxidase subunit gamma family protein | PviCFBP13507_25970 | Not Available | Positive | 5716276 - 5716908 | 23055.8 |
| formyltetrahydrofolate deformylase | PviCFBP13507_25975 | Not Available | Positive | 5716978 - 5717835 | 32095.3 |
| formaldehyde dehydrogenase, glutathione-independent | PviCFBP13507_25980 | Not Available | Positive | 5718062 - 5719261 | 41908.5 |
| hypothetical protein | PviCFBP13507_25990 | Not Available | Positive | 5720653 - 5721219 | 18447.0 |
| rhs repeat-associated core domain-containing protein | PviCFBP13507_25995 | Not Available | Negative | 5721235 - 5722266 | 37066.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
