Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf262 domain-containing protein | PviCFBP13507_25890 | Not Available | Positive | 5692472 - 5693578 | 41526.5 |
| hypothetical protein | PviCFBP13507_25895 | Not Available | Positive | 5693589 - 5694233 | 24158.9 |
| integrase | PviCFBP13507_25900 | Not Available | Negative | 5694416 - 5695588 | 42002.2 |
| hypothetical protein | PviCFBP13507_25910 | Not Available | Positive | 5696161 - 5697321 | 41581.5 |
| hypothetical protein | PviCFBP13507_25915 | Not Available | Positive | 5697308 - 5697727 | 16382.6 |
| glyoxalase | PviCFBP13507_25920 | Not Available | Negative | 5697801 - 5698187 | 14478.3 |
| 2og-fe(ii) oxygenase | PviCFBP13507_25925 | Not Available | Negative | 5698189 - 5699202 | 37794.4 |
| cysteine hydrolase | PviCFBP13507_25930 | Not Available | Negative | 5699429 - 5700067 | 23356.0 |
| exodeoxyribonuclease v subunit alpha | PviCFBP13507_25935 | Not Available | Negative | 5700249 - 5702342 | 76524.0 |
| exodeoxyribonuclease v subunit beta | PviCFBP13507_25940 | Not Available | Negative | 5702339 - 5706031 | 137921.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
