Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1289 domain-containing protein | PviCFBP13507_25635 | Not Available | Positive | 5631357 - 5631548 | 7199.91 |
| 23s rrna pseudouridine(2605) synthase rlub | PviCFBP13507_25640 | Not Available | Positive | 5631734 - 5632957 | 45563.3 |
| amino acid permease | PviCFBP13507_25650 | Not Available | Positive | 5633255 - 5634664 | 50926.2 |
| aminoacyl-trna hydrolase | PviCFBP13507_25655 | Not Available | Positive | 5634781 - 5635194 | 15234.5 |
| 6,7-dimethyl-8-ribityllumazine synthase | PviCFBP13507_25660 | Not Available | Negative | 5635252 - 5635764 | 18978.6 |
| low-specificity l-threonine aldolase | PviCFBP13507_25665 | Not Available | Positive | 5636271 - 5637275 | 35707.0 |
| alanine--trna ligase | PviCFBP13507_25670 | Not Available | Positive | 5637419 - 5640043 | 94417.9 |
| aspartate kinase | PviCFBP13507_25675 | Not Available | Positive | 5640137 - 5641369 | 44418.4 |
| carbon storage regulator | PviCFBP13507_25680 | Not Available | Positive | 5641542 - 5641730 | 6953.53 |
| Trna-ser | Not Available | Not Available | Positive | 5641793 - 5641883 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
