Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Pseudomonadales
Family
Pseudomonadaceae
Genus
Pseudomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Pseudomonadales |
| Family | Pseudomonadaceae |
| Genus | Pseudomonas |
| Species | Pseudomonas viridiflava |
| Strain | CFBP13507 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | epilithic biofilms; Fresh water; gut; icepacks; irrigation water; lake water; litter; rain; snow; snowpack |
| Biotic relationship | Free-living |
| Host(s) | Homo sapiens, Gallus gallus, Viridiplantae |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1181068 bp
Thymine Count
1214519 bp
Guanine Count
1761031 bp
Cytosine Count
1725290 bp
Genome Length
5881917 bp
Protein-coding Genes
5114 genes
Non-Coding Genes
83 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna polymerase sigma factor rpod | PviCFBP13507_24365 | Not Available | Positive | 5367452 - 5369302 | 69400.9 |
| ggdef domain-containing protein | PviCFBP13507_24370 | Not Available | Positive | 5369709 - 5372171 | 91101.1 |
| Trna-met | Not Available | Not Available | Positive | 5372226 - 5372302 | Not Available |
| integrase | PviCFBP13507_24380 | Not Available | Positive | 5372431 - 5373498 | 40050.4 |
| hypothetical protein | PviCFBP13507_24385 | Not Available | Positive | 5373824 - 5375062 | 48342.3 |
| hypothetical protein | PviCFBP13507_24390 | Not Available | Positive | 5375157 - 5376632 | 56767.9 |
| hypothetical protein | PviCFBP13507_24395 | Not Available | Negative | 5376950 - 5378239 | 47652.1 |
| plasmid-related protein | PviCFBP13507_24400 | Not Available | Positive | 5378482 - 5378700 | 7993.79 |
| hypothetical protein | PviCFBP13507_24405 | Not Available | Positive | 5378812 - 5379600 | 29350.8 |
| hypothetical protein | PviCFBP13507_24410 | Not Available | Positive | 5379792 - 5380055 | 9638.69 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Spots | Causes | PMC8659605 |
| Streaks | Causes | PMC8659605 |
| Necrosis | Causes | PMC8659605 |
| Rots | Causes | PMC8659605 |
| Kiwifruit blossom blight | Causes | PMC8659605 |
| Pith necrosis | Causes | PMC8659605 |
| Bacterial stem blight disease | Causes | PMC8659605 |
| Soft rot | Causes | PMC8659605 |
| Cankers | Causes | PMC11448091 |
| Tomato pith necrosis | Causes | PMC12847849 |
